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Review Article| Volume 8, ISSUE 1, P123-137, January 2023

The Management of Infectious Pulmonary Processes in the Emergency Department

Pneumonia

      Keywords

      Key points

      • Pneumonia is a common disease process, and emergency medicine providers will be required to accurately diagnosis and manage pneumonia.
      • The 3 primary types of pneumonia are bacterial, viral, and fungal.
      • Since 2019, SARS-CoV-2 has greatly increased the percentage of patients being seen in emergency departments for symptoms consistent with pneumonia.
      • Diagnostic and management guidelines have been established for community-acquired bacterial pneumonia, COVID-19 viral pneumonia, and fungal pneumonia.

      Introduction

      In the United States, pneumonia accounts for approximately 2.2% of emergency department visits per year. A significant percentage of those patients can be safely managed at home, not requiring admission.
      • Self W.H.
      • Grijalva C.G.
      • Zhu Y.Z.
      • et al.
      Rates of emergency department visits due to pneumonia in the United States, July 2006-June 2009.
      Age, male gender, and the presence of complicating comorbidities increase the likelihood of requiring hospitalization, and therefore, increase the disease burden.
      • Self W.H.
      • Grijalva C.G.
      • Zhu Y.Z.
      • et al.
      Rates of emergency department visits due to pneumonia in the United States, July 2006-June 2009.
      ,

      Regunath H, Oba Y. Community-acquired pneumonia. StatPearls. Updated August 18, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK430749/.

      Bacterial, viral, and fungal pathogens can cause infectious pneumonia. The cause, clinical presentation, and treatment recommendations for each class of pathogens are reviewed. Although nosocomial respiratory infections are prevalent, they will not be discussed in this article. In addition, the revised guidelines established in 2019 for the diagnosis and treatment of community-acquired pneumonia (CAP) recommend that the nosocomial pneumonia classification, also known as health care–associated pneumonia or hospital-acquired pneumonia, be abandoned and that recommendations for management be based on severity and epidemiologic data alone.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      Community-acquired bacterial pneumonia remains a leading cause of death worldwide with a mortality as high as 24.8 per 10,000 cases in the United States and between 1.5 and 14 cases per 1000 people globally.

      Regunath H, Oba Y. Community-acquired pneumonia. StatPearls. Updated August 18, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK430749/.

      ,
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      Prevalence varies based on season, population characteristics, and geographical factors. Streptococcus pneumoniae and Haemophilus influenzae are the leading causes of bacterial pneumonia worldwide. The most common symptoms of cough, fever, and dyspnea are a result of pathogens being transmitted to the lower-respiratory tract via the pharynx. There is, however, significant heterogeneity within the clinical profile of bacterial pneumonia. Evaluation, treatment recommendations, and guidelines have been established and are considered the standard of care for emergency medicine providers.

      Regunath H, Oba Y. Community-acquired pneumonia. StatPearls. Updated August 18, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK430749/.

      ,
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      Viral community–acquired pneumonia has an equal prevalence among children and adults with approximately 100 million cases annually in each group.
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.
      There is consensus that viral pneumonias are underdiagnosed; however, given the availability and sensitivity of molecular diagnostic tests, the gap may be closing. One in 3 CAP are a result of a viral cause, most commonly rhinoviruses, influenza viruses, and coronaviruses.
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.
      There is risk of bacterial coinfection, making diagnosis and targeted treatment a challenge. In individual circumstances, neuraminidase inhibitors are recommended for influenza-specific pneumonia; however, a clear consensus does not exist for algorithmic management when concerned about bacterial overlap.
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.
      ,
      • Ng T.M.
      • Ong S.W.X.
      • Loo A.Y.X.
      • et al.
      Antibiotic therapy in the treatment of COVID-19 pneumonia: who and when?.
      Although sufficient data exist to support the recommended management of SARS-CoV-2 pneumonia, a provider must approach COVID-19 pneumonia with caution given the relative paucity of data and the frequency of iterations in guidelines and suggestions.
      • Ng T.M.
      • Ong S.W.X.
      • Loo A.Y.X.
      • et al.
      Antibiotic therapy in the treatment of COVID-19 pneumonia: who and when?.
      Given current global epidemiologic trends, this article dedicates the discussion of viral pneumonias primarily to SARS-CoV-2.
      Pneumonias secondary to a fungal pathology are rare in immunocompetent individuals but pose life-threatening risk to those with a compromised immune response. Patients with immunodeficiency disorders, such as HIV/AIDS, or patients receiving immunosuppressive therapy are at higher risk for developing fungal respiratory infections. In developed countries, opportunistic pathogens, such as Candida or Cryptococcus, are increasing in prevalence, as the survival rate of the susceptible population groups increases. Similar to bacterial resistance to antibiotics, there has been an emergence of resistant fungal pathogens to typical treatment, making management of these infections challenging.
      • Arastehfar A.
      • Gabaldon T.
      • Garcia-Rubio R.
      • Jenks J.D.
      • Hoenigl M.
      • Salzer H.J.F.
      • Ilkit M.
      • Lass-Florl C.
      • Perlin D.S.
      Drug-resistant fungi: an emerging challenge threatening our limited antifungal armamentarium.
      ,
      • Li A.
      • Lu G.
      • Meng G.
      Pathogenic fungal infection in the lung.
      Although not nearly as prevalent as viral or bacterial CAP, it is important that emergency medicine providers consider the possibility of fungal infection in an at-risk patient population so as to ensure early diagnosis and effective treatment.

      Community-Acquired Bacterial Pneumonia

      Epidemiology

      In the United States, CAP accounts for more than 5 million cases of pneumonia per year. Eighty percent of these cases are treated through outpatient management, whereas the remaining 20% of individuals require hospitalization. Incidences of CAP are higher in the male and African American populations. Mortality is greater in women. The incidence rate of CAP increases with the extremes of age, and in the United States, CAP carries a mortality of 7.3%.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.

      Cause

      CAP is categorized, and treated, based on the cause of “typical” or “atypical” organisms. S pneumoniae, H influenzae, Staphylococcus aureus, and group A streptococci are 4 of the most common typical organisms causing CAP. Atypical pneumonia can be caused by organisms such as Legionella, Mycoplasma pneumoniae, and Chlamydia pneumoniae. S pneumoniae and K pneumoniae are the most common causes of CAP. Methicillin-resistant Staphylococcus aureus (MRSA) is the most common cause of health care–associated pneumonia, whereas ventilator-associated pneumonia has a high prevalence of multidrug-resistant bacteria. In recent years, there has been an increase in overall antimicrobial resistance by gram-negative bacteria most commonly found in patients with severe CAP, which substantially increases morbidity, mortality, and health care–associated cost.
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      Bacterial pathogens causing CAP often coexist with viral pathogens, making initial management challenging at best.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      ,
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.

      Clinical presentation

      Given the heterogeneity of CAP, the clinical presentation of individuals will vary. The last 10 years, however, have shown substantial expansion of evidence-based data to support the diagnosis and treatment of CAP based on improved and rapid diagnostic testing as well as an increase in understanding of differentiated symptoms based on type of causative agent.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      The hallmark symptoms of community-acquired bacterial pneumonia include cough, with or without yellow/green sputum production, fever, chills, pleuritic chest pain, and potential confusion in the elderly. Patients may also experience the less-specific symptoms of fatigue, headaches, and feelings of malaise.

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      Progression of bacterial pneumonia can be more rapid than viral or fungal pathogens and, therefore, may produce symptoms representative of systemic involvement, including tachycardia, hypotension, and altered mental status. Atypical pathogens causing CAP are likely to cause extrapulmonary symptoms related to gastrointestinal upset, including nausea, vomiting, or diarrhea.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      ,

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      Diagnosis/treatment

      Early and accurate diagnosis of CAP is crucial in order to initiate targeted therapy while decreasing unnecessary exposure, and therefore possible resistance or adverse reaction, to antibiotics.

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      Following the physical examination, laboratory diagnostic testing, radiographic imaging, and clinical decision making are crucial components in the diagnosis of CAP.
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      ,

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      ,

      Ramirez JA, File, TM, Bond S. UpToDate. Overview of community-acquired pneumonia. 2021. Available at: https://www.uptodate.com/contents/overview-of-community-acquired-pneumonia-in-adults?search=diagnosis%20of%20community%20acquired%20pneumonia&source=search_result&selectedTitle=2∼150&usage_type=default&display_rank=2. Accessed March 1, 2022.

      Clinical decision-making tools are recommended for use in prognosis and to guide the management of patients with pneumonia. They also assist in disposition planning from the emergency department, guiding decision making for individual hospital admission or discharge home. The Pneumonia Severity Index (PSI) is preferential because of the moderate quality of evidence available to support its efficacy over the CURB-65 (confusion, urea level, respiratory rate, blood pressure, and age >65). The PSI demonstrates a higher predictive value as compared with the CURB-65. Clinician judgment must always be integrated into decision making, as predictive tools can oversimplify and do not consistently consider patient variables.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      ,

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      In 2019, the Infectious Diseases Society of America (IDSA) and the American Thoracic Society (ATS) established revised guidelines for the diagnosis and treatment of CAP. Criteria are outlined for determining severe CAP based on the following minor and major symptoms and diagnostic findings
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      ,
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      ,
      • Karimi E.
      Comparing sensitivity of ultrasonography and plain chest radiography in detection of pneumonia: a diagnostic value study.
      :
      • Sputum cultures: Recommended only in patients meeting criteria for severe disease, especially if requiring mechanical ventilation. There is lack of evidence to support the use of sputum cultures in outpatient settings.
      • Blood cultures: Recommended in patients meeting criteria for severe disease, those being treated empirically for MRSA or Pseudomonas aeruginosa, those with a history of MRSA or P aeruginosa, or those hospitalized within the past 90 days. These recommendations do have a low quality of evidence, although blood cultures continue to remain part of most institutional clinical pathways in the diagnosis of CAP. Given the overlap of CAP and sepsis, utilization of blood cultures is appropriate. Data prove that positive blood cultures within 10 hours of admission have shown an increased risk of mortality; however, only 40% of blood cultures drawn at initial presentation are positive.
      • Molecular diagnostic testing/polymerase chain reaction testing: Recommended testing for influenza and SARS-CoV-2 based on local transmissibility data and prevalence. Molecular diagnostic tests have an overall 70% to 80% sensitivity rate and 99% to 100% specificity rate, therefore isolating cases of viral or atypical bacterial cause.
      • Legionella and pneumococcal urinary antigen testing (UAT): Recommended only in the patient with severe CAP or in cases of high epidemiologic concern/recent travel (Legionella).
      • Imaging: Chest computed tomography (CT) is considered the gold standard in detection of both CAP and viral pneumonia; however, cost, accessibility, and radiation continue to be limiting factors. Chest radiograph alone has a sensitivity of 38% to 76%; however, when combined with molecular testing, sensitivity and specificity increase. Ultrasonography has been shown to have sensitivity rates of 80% to 90% in the detection of pneumonia. The IDSA/ATS guidelines no longer recommend routine use of chest radiograph in follow-up after a pneumonia diagnosis.
      In all patients where community-acquired bacterial pneumonia is likely, empiric therapy is recommended. Risk assessment should be used to determine if treatment can be conducted in an outpatient or inpatient setting. As stated, the PSI and CURB-65 clinical assessment tools are effective and recommended guidelines used in beginning treatment decisions. The CURB-65 and PSI help estimate mortality risk in CAP based on various risk factors associated with worse outcomes.

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      Treatment decisions vary greatly owing to differences in risk assessment outcomes indicated, comorbidities, and likelihood of MRSA infection. Tables 1 and 2 outline the recommended outpatient and in-hospital initial treatments for CAP.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      Table 1Empiric treatment of outpatient community-acquired pneumonia
      Adapted from Ramirez JA, File, TM, Bond S. UpToDate. Overview of community-acquired pneumonia. Sept 7, 2021. Accessed March 1, 2022.
      Recommended Treatment
      No comorbidities/risk factors for MRSA or pseudomonasAmoxicillin OR doxycycline OR macrolide
      With comorbiditiesAugmentin or cephalosporin AND macrolide or doxycycline OR monotherapy with respiratory fluoroquinolone
      Table 2Empiric treatment of inpatient community-acquired pneumonia
      Adapted from Ramirez JA, File, TM, Bond S. UpToDate. Overview of community-acquired pneumonia. Sept 7, 2021. Accessed March 1, 2022.
      StandardPrior MRSAPrior Pseudomonas
      Nonsevere inpatientB-Lactam + macrolide
      Ampicillin and sulbactam, cefotaxime, ceftriaxone, ceftaroline, AND azithromycin or clarithromycin.
      OR respiratory fluoroquinolone
      Levofloxacin or moxifloxacin.
      Add MRSA coverage
      Per 2016 ATS/IDSA guidelines: vancomycin or linezolid.
      Add pseudo coverage
      Per 2016 ATS/IDSA guidelines: piperacillin-tazobactam, cefepime, ceftazidime, imipenem, meropenem, or aztreonam.
      Severe inpatientB-Lactam + macrolide
      Ampicillin and sulbactam, cefotaxime, ceftriaxone, ceftaroline, AND azithromycin or clarithromycin.
      a Ampicillin and sulbactam, cefotaxime, ceftriaxone, ceftaroline, AND azithromycin or clarithromycin.
      b Levofloxacin or moxifloxacin.
      c Per 2016 ATS/IDSA guidelines: vancomycin or linezolid.
      d Per 2016 ATS/IDSA guidelines: piperacillin-tazobactam, cefepime, ceftazidime, imipenem, meropenem, or aztreonam.

      Prognosis

      Outcomes of treatment largely depend upon age of onset, hospitalization status with treatment, and the presence of comorbidities. The overall mortality for pneumonia may be up to 30% if left untreated. Overall prognosis, however, is tremendous in a healthy patient. Most individuals respond to treatment within 48 to 72 hours of initial management, both in hospital and at home. Respiratory failure, sepsis, organ failure, coagulopathy, and exacerbation of comorbidities are complications to consider as a result of CAP.

      Sattar SA, Sharma S. Bacterial pneumonia. StatPearls. Updated December 28, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK513321/

      Community-Acquired Viral Pneumonia

      Epidemiology

      As stated, viral pneumonia is discussed, with reference only to pneumonia caused b the SARS-CoV-2 virus. At the time of publication, there have been more than 470 million confirmed cases of COVID-19 globally with more than 6 million deaths reportedy to the World Health Organization (WHO) and to the Centers for Disease Control and Prevention (CDC).
      • McIntosh K.
      • Hirsch M.S.
      • Bloom A.
      Currently, 10 vaccines have been granted an emergency use listing by the WHO. Worldwide vaccination rates are highest in countries like Canada, Chile, and Australia with countrywide vaccination greater than 90%. Sub-Saharan Africa has the lowest overall population vaccination rates at less than 10%, and China does not report vaccination rates. The United States has an overall nationwide vaccination rate of 70%.
      Vaccination rates, approvals, and trials by country. COVID-19 Vaccine Tracker.
      Vaccination compliance is determined by factors such as availability, vaccination hesitancy, and political or religious affiliation.
      Before the COVID-19 pandemic, common viral causes of pneumonia included influenza A and B, human boca viruses, coronaviruses NL63 and HKU1, and respiratory syncytial virus (commonly in children).
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.
      Although these viral illnesses remain, SARS-CoV-2 pneumonias have contributed to a majority of viral pneumonias worldwide. Vaccination has been proven to decrease mortality in COVID-19 infections and to decrease hospitalization rates of infected individuals, both with and without comorbidities.
      • McIntosh K.
      • Hirsch M.S.
      • Bloom A.
      ,
      10. CDC. COVID Data Tracker. Updated daily by 8 pm EST.
      ,
      • CDC
      Effectiveness of a third dose of MRNA vaccines against COVID-19–associated emergency department and urgent care encounters and hospitalizations among adults during periods of delta and omicron variant predominance — VISION network, 10 states, August 2021–January 2022.
      Following the evolution of coronavirus variants, delta and omicron, a third vaccination for COVID-19 has shown a 94% and 82% (respectively) prevention rate of an emergency-department encounter following exposure to the virus. Vaccines have proven to be 94% effective in preventing hospitalization from the delta variant and 90% from the omicron variant.
      • CDC
      Effectiveness of a third dose of MRNA vaccines against COVID-19–associated emergency department and urgent care encounters and hospitalizations among adults during periods of delta and omicron variant predominance — VISION network, 10 states, August 2021–January 2022.

      Clinical presentation

      Although data are lacking in long-term effects of COVID-19 as well as efficacy of vaccination over time, there is improved understanding within the medical community regarding presenting symptoms of patients infected by SARS-CoV-2. COVID-19 pneumonia has a virulent pathology and is highly transmissible with the inhalation of virus infecting the alveolar and endothelial cells in the pulmonary tissue.
      • Guarnera A.
      • Podda P.
      • Santini E.
      • Paolantonio P.
      • Laghi A.
      Differential diagnosis of COVID-19 pneumonia: the current challenge for the radiologist – a pictorial essay. In.
      The most common method of transmission for this virus is person to person via respiratory particles. Respiratory secretions can spread when one breathes in close proximity to another individual (<6 ft) or when eliciting any phonatory behavior (ie, coughing, singing, speaking, and laughing). It is best understood that the airborne transmission of a viable COVID-19 particle can last up to 16 hours before infecting another host, although likelihood of infection is affected by things like viral load and vaccination status.
      • Samet J.
      • Prather K.
      • Benjamin G.
      • et al.
      Airborne transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2): what we know.
      ,
      • Ahn J.Y.
      • An S.
      • Sohn Y.
      • et al.
      Environmental contamination in the isolation rooms of COVID-19 patients with severe pneumonia requiring mechanical ventilation or high-flow oxygen therapy.
      Current data, including contact tracing, support both asymptomatic and symptomatic spread of SARS-CoV-2. This is due to the similar viral loads detected from nasal and throat swabs from each patient population, with a slightly higher predominance of virus detected via nasal swab.
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.
      ,
      • Zou L.
      • Ruan F.
      • Huang M.
      • et al.
      SARS-CoV-2 viral load in upper respiratory specimens of infected patients.
      COVID-19 infectiousness is highest in the early course of the illness, during the 2 days before symptom onset. This viral nucleic acid shedding pattern of SARS-CoV-2 resembles that of influenza and can make it difficult to control transmission.
      • Zou L.
      • Ruan F.
      • Huang M.
      • et al.
      SARS-CoV-2 viral load in upper respiratory specimens of infected patients.
      Specific to immunocompetent individuals, an infected patient is less likely to transmit the virus after day 7.
      • McIntosh K.
      • Hirsch M.S.
      • Bloom A.
      ,
      • He X.
      • Lau E.H.Y.
      • Wu P.
      • et al.
      Temporal dynamics in viral shedding and transmissibility of COVID-19.
      ,
      • Jones T.C.
      • Biele G.
      • Muhlemann B.
      Estimating infectiousness throughout SARS-CoV-2 infection course.
      Within an emergent setting, patients with COVID-19 infection can present with symptoms ranging in severity from mild to severe. Common complaints include fever, cough, dyspnea, myalgia, loss/alterations of gustatory and olfactory senses, gastrointestinal manifestations (most commonly diarrhea), and headaches.
      • Pagliano P.
      • Sellitto C.
      • Conti V.
      • et al.
      Characteristics of viral pneumonia in the COVID-19 era: an update.
      Severe illness is more frequent among older individuals and those with multiple comorbidities. Providers may also note delirium and general health decline especially in the older population, who may have previous neurologic impairments.

      McIntosh, K. COVID-19: Clinical Features. UpToDate. Updated Jan 10, 2022. Available at: https://www.uptodate.com/contents/covid-19-clinical-features. Accessed March 18, 2022.

      Acute respiratory distress syndrome (ARDS) is a significant complication of COVID-19 pneumonia and has a high mortality.
      • Guarnera A.
      • Podda P.
      • Santini E.
      • Paolantonio P.
      • Laghi A.
      Differential diagnosis of COVID-19 pneumonia: the current challenge for the radiologist – a pictorial essay. In.
      Current guidelines recommend laboratory and diagnostic testing in the diagnosis of COVID-19 pneumonia. Recommendations are largely consistent with the initial evaluation of CAP with a few exceptions:
      • Procalcitonin: Procalcitonin is a biomarker of bacterial infection. It can be useful in determining bacterial coinfection. Data suggest that procalcitonin is an effective diagnostic tool used upon initial presentation as well as for monitoring treatment and guiding management.
        • Wonhee S.
        • Simon M.S.
        • Choi J.J.
        • et al.
        Characteristics of procalcitonin in hospitalized COVID-19 patients and clinical outcomes of antibiotic use stratified by procalcitonin levels.
      • Laboratory inflammatory markers (erythrocyte sedimentation rate and C-reactive protein): These may be increased in patients presenting with COVID-19 pneumonia, however, are nonspecific and do not assist in specific initial management, although they may be better used to monitor progress and outcome.

        McIntosh, K. COVID-19: Clinical Features. UpToDate. Updated Jan 10, 2022. Available at: https://www.uptodate.com/contents/covid-19-clinical-features. Accessed March 18, 2022.

      • Imaging: Chest radiograph is insensitive in accurately detecting early or mild COVID-19 pneumonia. It is, however, cost-effective and time effective. CT imaging of the chest is more sensitive for early detection as well as for monitoring disease progression.
        • Guarnera A.
        • Podda P.
        • Santini E.
        • Paolantonio P.
        • Laghi A.
        Differential diagnosis of COVID-19 pneumonia: the current challenge for the radiologist – a pictorial essay. In.
        It is common to see ground-glass opacities bilaterally with COVID-19 pneumonia on imaging studies.

      Treatment

      The management of COVID-19 pneumonia is based on the severity of the illness at time of presentation to the emergency department. Minimizing the risk of health care worker and patient exposure must be considered, and measures such as rapid triage and risk stratification should be implemented.
      • Schalekamp S.
      • Bleeker-Rovers C.P.
      • Beenen L.F.M.
      Chest CT in the emergency department for diagnosis of COVID-19 pneumonia: Dutch experience.
      Reliable patients who present with any upper-respiratory symptoms, such as rhinorrhea, loss of taste or smell, diarrhea, and fatigue, and who have minimal to no comorbidities, can be managed at home and often should be evaluated through a telemedicine or primary care visit.
      • Schalekamp S.
      • Bleeker-Rovers C.P.
      • Beenen L.F.M.
      Chest CT in the emergency department for diagnosis of COVID-19 pneumonia: Dutch experience.
      With signs of lower-respiratory tract pathologic condition, such as dyspnea or cough, and with patients having multiple comorbidities, hospitalization should be considered. Severe illness is defined by an oxygen saturation below 94%, a respiratory rate greater than 30, and the presence of infiltrates on imaging in greater than 50% of lung tissue.
      • Schalekamp S.
      • Bleeker-Rovers C.P.
      • Beenen L.F.M.
      Chest CT in the emergency department for diagnosis of COVID-19 pneumonia: Dutch experience.
      These patients will be monitored, admitted, and likely need supplemental oxygen. Currently, pharmacologic treatments are recommended based on disease severity.
      • Pantazopoulos I.
      • Tsikrika S.
      • Kolokytha S.
      • et al.
      Management of COVID-19 patients in the emergency department.
      The American Academy College of Emergency Physicians recommends the following specific approach based on severity
      • Pantazopoulos I.
      • Tsikrika S.
      • Kolokytha S.
      • et al.
      Management of COVID-19 patients in the emergency department.
      :
      • Mild to moderate signs of COVID-19: These patients may benefit from nonpharmacologic treatment alone. These options include home oxygen therapy, breathing exercises, continual ambulation, adequate sleep, and a consistent healthy diet with adequate hydration.
      • Severe signs of COVID-19: Recommendations for oxygen support using a nasal cannula with titration to 6 L, high-flow nasal cannula (HFNC) or high-velocity therapy, noninvasive positive pressure ventilation if HFNC is not available, or a consideration of prone positioning if patient can be monitored closely. Proning of patients is contraindicated in the presence of respiratory distress.
      • Endotracheal intubation is considered: If a goal of oxygenation at 92% to 96% cannot be maintained, low-tidal volume, plateau pressures less than 30 cm, higher positive end-expiratory pressure, or if a patient experiences refractory hypoxemia with prone ventilation. Currently, sufficient data do not exist to determine the benefit of extracorporeal membrane oxygenation in the management of severe COVID-19 pneumonia.
      Recommendations for pharmacologic management of COVID-19 are not made specific to those patients with or without pneumonia. Recommendations are based on outpatient or inpatient management and therefore on disease severity. Current recommendations as seen in Tables 3 and 4 and Fig. 1 are summarized as follows
      • Pantazopoulos I.
      • Tsikrika S.
      • Kolokytha S.
      • et al.
      Management of COVID-19 patients in the emergency department.
      ,
      Coronavirus Disease 2019 (COVID-19) Treatment guidelines. National Institutes of Health.
      :
      • Remdesivir is the only antiviral medication approved by the Food and Drug Administration (FDA) for the treatment of COVID-19.
      • Ritonavir-boosted nirmatrelvir (Paxlovid) and SARS-CoV-2 monoclonal antibodies have been given an Emergency Use Authorization from the FDA.
      • Nonhospitalized patients: All patients with confirmed SARS-CoV-2 who are at risk for progressing to severe disease should receive (in order of preference): paxlovid, sotrovid, remdesivir, and molnupiravir. Systemic corticosteroids are not recommended.
      • Hospitalized patients: Remdesivir is recommended in all patients requiring admission for SARS-CoV-2. In addition, dexamethasone is recommended if supplemental oxygen is required. Finally, and dependent on severity of disease and progression, tocilizumab is recommended.
      • The National Institutes of Health and CDC update detailed guidelines regularly, including the use of heparin.
      Table 3Nonhospitalized patient guidelines for COVID-19
      Coronavirus Disease 2019 (COVID-19) Treatment guidelines. National Institutes of Health.
      Patient DispositionPanel’s Recommendations
      Does not require hospitalization or supplemental oxygen
      • All patients should be offered symptomatic management (AIII)
      • For patients who are at high risk of progressing to severe COVID-19a (treatments are listed in order of preference based on efficacy and convenience of use):
        • Ritonavir-boosted nirmatrelvir (Paxlovid)b,c (AIIa)
        • Sotrovimabd (AIIa)
        • Remdesivirc,e (BIIa)
        • Molnupiravirc,f (CIIa)
      • The panel recommends against the use of dexamethasone or other systemic corticosteroids in the absence of another indication (AIIa)g
      Discharged from hospital inpatient setting in stable condition and does not require supplemental oxygenThe panel recommends against continuing the use of remdesivir (AIIa), dexamethasoneg (AIIa), or baricitinibg (AIIa) after hospital discharge
      Discharged from hospital inpatient setting and requires supplemental oxygen

      For those who are stable enough for discharge but who still require oxygenh
      There is insufficient evidence to recommend either for or against the continued use of remdesivir or dexamethasone
      Discharged from ED despite new or increasing need for supplemental oxygen

      When hospital resources are limited, inpatient admission is not possible, and close follow-up is ensuredi
      The panel recommends using dexamethasone 6 mg PO once daily for the duration of supplemental oxygen (dexamethasone use should not exceed 10 days) with monitoring of AEs (BIII)

      Because remdesivir is recommended for patients with similar oxygen needs who are hospitalized,j clinicians may consider using it in this setting. Given that remdesivir requires intravenous infusions for up to 5 consecutive days, there may be logistical constraints to administering remdesivir in the outpatient setting
      Rating of Recommendations: A = strong; B = moderate; C = Optimal.
      Rating of Evidence: I = one or more randomized trails without major limitations; IIa = other randomized trails or subgroup analyses of randomized trails; IIb = nonrandomized trials or observational cohort studies; III = expert opinion.
      Table 4Fungal pneumonia—comparison of 2007 American Thoracic Society/Infectious Diseases Society of America guidelines with 2019 guidelines
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      Recommendation2007 ATS/IDSA Guideline2019 ATS/IDSA Guideline
      Sputum culturePrimarily recommended in patients with severe diseaseNow recommended in patients with severe disease as well as in all inpatients empirically treated for MRSA or P aeruginosa
      Blood culturePrimarily recommended in patients with severe diseaseNow recommended in patients with severe disease as well as in all inpatients empirically treated for MRSA or P aeruginosa
      Macrolide monotherapyStrong recommendation for outpatientsConditional recommendation for outpatients based on resistance levels
      Use of procalcitoninNot coveredNot recommended to determine need for initial antibacterial therapy
      Use of corticosteroidsNot coveredRecommended not to use. May be considered in patients with refractory septic shock
      Use of health care-associated pneumonia categoryAccepted as introduced in the 2005 ATS/IDSA hospital-acquired and ventilator-associated pneumonia guidelinesRecommend abandoning this categorization. Emphasis on local epidemiology and validated risk factors to determine need for MRSA or P aeruginosa coverage. Increased emphasis on deescalation of treatment if cultures are negative
      Standard empiric therapy for severe CAPβ-Lactam/macrolide and β-lactam/fluoroquinolone combinations given equal weightingBoth accepted but stronger evidence in favor of β-lactam/macrolide combination
      Routine use of follow-up chest imagingNot addressedRecommended not to obtain. Patients may be eligible for lung cancer screening, which should be performed as clinically indicated
      Figure thumbnail gr1
      Fig. 1Hospitalized patient guidelines for treating COVID-19.
      Coronavirus Disease 2019 (COVID-19) Treatment guidelines. National Institutes of Health.

      Prognosis

      The prognosis of COVID-19 pneumonia is variable and ranges widely. Mortality is highest among patients with ARDS. There is no clinical significance in mortalities between COVID-19–related ARDS or non–COVID-19–related ARDS. Data suggest mortalities from 12% to 78% in patients diagnosed with COVID-19 and ARDS. Death from COVID-19 can result from other complications, such as arrhythmias, cardiac arrest, or pulmonary embolism. Rapid symptom progression does not contribute to worsened outcomes. Patient prognosis and outcome are affected by individual comorbidities, patient population and demographics, hospital staffing, and staff experience in treating COVID-19.

      Community-Acquired Fungal Pneumonia

      Cause/epidemiology

      Fungal pneumonia affects 2 different patient populations, neutropenic and nonneutropenic individuals. Risk factors for neutropenic fungal pneumonia include neutropenia greater than 10 days typically following chemotherapy or following a hematopoietic stem cell transplant. Risk factors for nonneutropenic fungal pneumonia include prolonged steroid use, which is further broken down into intermediate risk (<0.3 mg/kg/d prednisone equivalents for >3 weeks) and low risk (<7 days of steroid use). Transplant recipients, and patients with AIDS/HIV infection, chronic obstructive pulmonary disease, diabetes mellitus, liver failure/cirrhosis, renal failure/hemodialysis, severe immunodeficiency (chronic granulomatous disease), and critically ill intensive care unit (ICU) patients are at increased risk for developing fungal pneumonia.
      There are several common fungal pathogens leading to pneumonia. Coccidioidomycosis, also known as “valley fever,” is endemic to the Southwestern United States (primarily Arizona and California), Mexico, Central America, and South America. The fungal spores of coccidioidomycosis live in soil, which are transmitted via inhalation.
      • Arastehfar A.
      • Gabaldon T.
      • Garcia-Rubio R.
      • Jenks J.D.
      • Hoenigl M.
      • Salzer H.J.F.
      • Ilkit M.
      • Lass-Florl C.
      • Perlin D.S.
      Drug-resistant fungi: an emerging challenge threatening our limited antifungal armamentarium.
      Histoplasma capsulatum is a dimorphic fungus also transmitted via inhaled spores from soil but is endemic to the Ohio and Mississippi river valleys. Aspergillus species, most commonly Aspergillus fumigatus, is a common mold infection found in immunocompromised individuals.
      • Arastehfar A.
      • Gabaldon T.
      • Garcia-Rubio R.
      • Jenks J.D.
      • Hoenigl M.
      • Salzer H.J.F.
      • Ilkit M.
      • Lass-Florl C.
      • Perlin D.S.
      Drug-resistant fungi: an emerging challenge threatening our limited antifungal armamentarium.
      Neutropenia is the most common risk factor for invasive aspergillosis.
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      ,
      • Li A.
      • Lu G.
      • Meng G.
      Pathogenic fungal infection in the lung.
      Candida albicans, Cryptococcus neoformans, blastomyces, and Pneumocystis jiroveci are additional fungal pathogens found in at-risk patient populations.

      Regunath H, Oba Y. Community-acquired pneumonia. StatPearls. Updated August 18, 2021. Available at: https://www.ncbi.nlm.nih.gov/books/NBK430749/.

      ,
      • Arastehfar A.
      • Gabaldon T.
      • Garcia-Rubio R.
      • Jenks J.D.
      • Hoenigl M.
      • Salzer H.J.F.
      • Ilkit M.
      • Lass-Florl C.
      • Perlin D.S.
      Drug-resistant fungi: an emerging challenge threatening our limited antifungal armamentarium.

      Clinical presentation

      Neutropenic and nonneutropenic individuals with fungal pneumonia will present with varied clinical symptoms. Fever and symptoms consistent with angioinvasion are more prevalent in a neutropenic host. Angioinvasion leads to a higher susceptibility of fungal spread to other organs, most commonly the skin, brain, and eyes. Angioinvasion is not common in a nonneutropenic host. Most nonneutropenic patients are asymptomatic until later stages in the disease.
      • Martin-Loeches I.
      • Torres A.
      New guidelines for severe community-acquired pneumonia.
      ,
      • Li A.
      • Lu G.
      • Meng G.
      Pathogenic fungal infection in the lung.
      Although variable, patients with fungal pneumonia will typically present with a cough (79%–91%), fever (up to 75%), dyspnea (70%), increased sputum production (up to 65%), or pleuritic chest pain (up to 50%). Generalized symptoms of lightheadedness, malaise, weakness, headache, nausea/vomiting, joint pain, and rash can also be associated with fungal pneumonia but are less common as an initial complaint. The elderly population can present with nonspecific complaints as stated, as well as altered mental status independent of other symptoms. Specifically, coccidioidomycosis can cause fever, cough, headache, rash, muscle aches, and joint pain.
      • Center for Disease Control
      Pneumocystis pneumonia: fungal diseases.
      H capsulatum is commonly asymptomatic but can also mimic mild flulike symptoms, fever, headache, chest pain, dry cough, and night sweats. Inoculum size is a major determinant in the symptomatology of patients.
      • Akram S.M.
      • Koirala J.
      It is important to use appropriate history, physical examination, and laboratory and diagnostic imaging to exclude other disease processes, including bacterial or viral pneumonia.

      Diagnosis

      Because of the limitations in testing availability within emergency departments, the diagnosis of fungal pneumonia is often limited to the history and physical examination findings that are supported with imaging findings and consistent with patient risk factors,,
      • Woolfrey K.G.H.
      Pneumonia in adults: the practical emergency department perspective.
      :
      • Complete blood Count: Recommended to determine the presence of neutropenia and/or lymphopenia. This allows for a more targeted approach to management.
      • Blood and sputum cultures: There are limited data to support the benefit of blood and sputum cultures in the emergency department. Both cultures are useful for long-term management of patients and are often obtained upon presentation, especially if the patient is presenting with signs and symptoms of severe disease.
      • Serologic testing: Not commonly recommended in the emergent setting. Both acute and convalescent serum titers are necessary and are less likely to be available in this environment. IDSA/ATS guidelines state that serologic testing is only recommended in certain circumstances, such as ICU admission, failure of outpatient antibiotic management, presence of cavitary infiltrates, active alcohol abuse, severe or structural lung disease, positive Legionella UAT, positive pneumococcal UAT, and presence of pleural effusion.
      • Imaging: Chest radiograph is an appropriate and recommended initial diagnostic test. Findings may include lobar consolidation, cavitary lesions, or pleural effusions. As with bacterial and viral pneumonia, CT imaging may be required for further diagnostic accuracy. Bedside ultrasound is sensitive and specific in identifying pleural pulmonary lesions.

      Treatment

      For patients that have not been previously treated for pneumonia, empiric antibiotics are recommended and based on patient's exposure history, risk factors, and severity of disease. Severity of disease and short-term risk assessment can be determined using the CURB-65 and PSI criteria to establish inpatient versus outpatient management. Failure to improve with initial antibiotic management should raise suspicion for fungal infection.,
      • Woolfrey K.G.H.
      Pneumonia in adults: the practical emergency department perspective.
      • Kosmidis C.
      • Denning D.W.
      The clinical spectrum of pulmonary aspergillosis.
      Treatment of fungal infection is often targeted and based on blood and/or sputum culture results:
      • Aspergillosis: Initial therapy with voriconazole is recommended for most patients. The preferred alternative for patients that cannot tolerate the recommended initial therapy is a combination of posaconazole and isavuconazole.
        • Khan A.A.
        • Farooq F.
        • Jain S.K.
        • et al.
        Comparative host-pathogen interaction analyses of SARS-CoV2 and aspergillus fumigatus, and pathogenesis of COVID-19-associated aspergillosis.
      • P jiroveci: Initial therapy with trimethoprim/sulfamethoxazole is recommended.
        • Center for Disease Control
        Pneumocystis pneumonia: fungal diseases.
      • H capsulatum: If less than 4 weeks of an acute lung infection, no treatment is recommended. If greater than 4 weeks of an acute lung infection, a 3-month course of itraconazole is recommended.
        • Akram S.M.
        • Koirala J.
      Because of the rise in cases of COVID-19, and with the increased need for long-term intubation, there is a concomitant rise in A fumigatus infections.
      • Ruuskanen O.
      • Lahti E.
      • Jennings L.C.
      • et al.
      Viral pneumonia.
      Any patient with a recent COVID-19 infection, particularly in the circumstance of a recent history of hospitalization requiring intubation, has a higher risk of developing fungal pneumonia.
      • Metlay J.P.
      • Waterer G.W.
      • Long A.C.
      • et al.
      Diagnosis and treatment of adults with community-acquired pneumonia. An official clinical practice guideline of the American Thoracic Society and Infectious Diseases Society of America.
      ,
      • Khan A.A.
      • Farooq F.
      • Jain S.K.
      • et al.
      Comparative host-pathogen interaction analyses of SARS-CoV2 and aspergillus fumigatus, and pathogenesis of COVID-19-associated aspergillosis.
      The ATS/IDSA guidelines were revised in 2019 and are accepted as the standard of care (see Fig. 1).

      Discussion

      Pneumonia remains a common condition evaluated and treated in the emergency department. With the emergence of the SARS-CoV-2 virus and COVID-19–associated pneumonia, hospital admission rates for severe pneumonia have increased, leading to increased overall mortality. It is imperative that emergency medicine providers easily identify patients displaying signs and symptoms of both typical and atypical pneumonia and are familiar with the guidelines established for diagnosis and management of pneumonia, including recommended diagnostic testing. Guidelines for the management of bacterial, viral, and fungal pneumonias are created collaboratively by organizations like the IDSA, CDC, and ATS and revised regularly. The prevalence and cause of pneumonia are demographically and seasonally determined; therefore, providers must be aware of guiding treatment based on these factors. Individual patient risk factors must also be considered.

      Clinics care points

      • Streptococcus pneumoniae, Haemophilus influenzae, Staphylococcus aureus, and group A streptococci are 4 of the most common typical organisms causing community-acquired bacterial pneumonia. Geographical susceptibility, in addition to current guidelines, must be considered when selecting the appropriate treatment.
      • Empiric therapy is recommended in all patients with suspected community-acquired bacterial pneumonia.
      • Standard empiric therapy for severe community-acquired bacterial pneumonia includes a B-lactam/macrolide combination.
      • Because of the significant overlap in presentation of community-acquired bacterial pneumonia and sepsis, blood cultures are recommended in patients with severe disease or in those at risk for methicillin-resistant Staphylococcus aureus and/or pseudomonas.
      • Acute respiratory distress syndrome is a significant complication of COVID-19 pneumonia and has a high mortality, making rapid diagnosis critical.
      • Remdesivir is recommended in all patients requiring admission for SARS-CoV-2. In addition, dexamethasone is recommended if supplemental oxygen is required.
      • Failure to improve with initial antibiotic management should raise suspicion for fungal infection.

      Disclosure

      These authors declare that they have no conflicts of interest. These authors declare that they have no competing monetary interests or personal relationships that could have influenced the work reported here.

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